Publications of the Laboratory of Microbiology

Researchers of the Laboratory of Microbiology publish on a regular basis in scientific journals, professional journals, scientific and popular books, and proceedings.

Our publications

Evaluation of the biodegradability of surfactants through catabolism-based grouping and read-across

Geerts, R. (2025) Wageningen University. Promotor(en): A.J.M. Stams, co-promotor(en): C.M. Plugge, Cornelis G. van Ginkel - Wageningen: Wageningen University - ISBN: 9789465103235
Paving the way : Exploring glycan-driven formation of the infant gut microbiota using synthetic communities

Ioannou, Athanasia (2025) Wageningen University. Promotor(en): C. Belzer, co-promotor(en): J. Knol - Wageningen: Wageningen University - ISBN: 9789465104843
Buikbelang : Kennis van het darmmicrobioom zorgt voor gezondheidswinst!

Zhernakova, Sasha , Goris, Annelies , Boleij, Annemarie , Rebel, J.M.J. , te Velde, A.A. , Velthuis, A.G.J. , Belzer, C. , Ponsioen, C.Y. , Jonkers, D. , Keszthelyi, Daniel , Poljac, E. , Claassen, Eric , Zoetendal, E.G. , Hoevenaars, F.P.M. , Voragen, A.G.J. , Rijkers, G. , Smidt, H. , Schols, H.A. , Sommer, Iris E.C. , Seidell, Jaap C. , Fu, Jingyuan , Penders, John , Venema, K. , Keller, J.J. , Steenbergen, Laura , Verbeek, Marcel M. , de Zoete, Marcel R. , Puhlmann, M. , Beckers, M. , Bloemendaal, Mirjam , Smidt, M.P. , de Wit, N.J.W. , de Weijer, T. , Adam, T. (2025)
Akkermansia muciniphila : biology, microbial ecology, host interactions and therapeutic potential

Ioannou, Athanasia , Berkhout, Maryse D. , Geerlings, Sharon Y. , Belzer, Clara (2025) Nature Reviews Microbiology (2025), Volume: 23, Issue: 3 - ISSN 1740-1526 - p. 162-177.
Class 2 Type V CRISPR-Cas prime editing

De Vleesschauwer, David , Meulewaeter, Frank , Kuijpers, Anne-Marie , Staals, Raymond Hubert Josèphe , Van Der Oost, John , D'Halluin, Katelijn , Swartjes, Thomas , Verhagen, Han , Villegas Warren, Ricardo (2025)
Do we need a standardized 16S rRNA gene amplicon sequencing analysis protocol for poultry microbiota research?

Lyte, Joshua M. , Seyoum, Mitiku M. , Ayala, Diana , Kers, Jannigje G. , Caputi, Valentina , Johnson, Timothy , Zhang, Li , Rehberger, Joshua , Zhang, Guolong , Dridi, Sami , Hale, Brett , De Oliveira, Jean E. , Grum, Daniel , Smith, Alexandra H. , Kogut, Michael , Ricke, Steven C. , Ballou, Anne , Potter, Bill , Proszkowiec-Weglarz, Monika (2025) Poultry Science (2025), Volume: 104, Issue: 7 - ISSN 0032-5791
Assessing the potential for non-digestible carbohydrates toward mitigating adverse effects of antibiotics on microbiota composition and activity in an in vitro colon model of the weaning infant

Endika, Martha F. , Barnett, David J.M. , Olmos, Emiliana M. , ter Braak, Cajo J.F. , Arts, Ilja C.W. , Penders, John , Nauta, Arjen , Leemhuis, Hans , Venema, Koen , Smidt, Hauke (2025) FEMS Microbiology Ecology (2025), Volume: 101, Issue: 4 - ISSN 0168-6496
Why do babies cry? Exploring the role of the gut microbiota in infantile colic, constipation, and cramps in the KOALA birth cohort study

Barnett, David , Thijs, Carel , Mommers, Monique , Endika, Martha , Klostermann, Cynthia , Schols, Henk , Smidt, Hauke , Nauta, Arjen , Arts, Ilja , Penders, John (2025) Gut Microbes (2025), Volume: 17, Issue: 1 - ISSN 1949-0976
Methanol and Carbon Monoxide Metabolism of the Thermophile Moorella caeni

Vecchini Santaella, Nicolas A. , Stams, Alfons J.M. , Sousa, Diana Z. (2025) Environmental Microbiology (2025), Volume: 27, Issue: 4 - ISSN 1462-2912
The link between ultra-processed food consumption, fecal microbiota, and metabolomic profiles in older mediterranean adults at high cardiovascular risk

Atzeni, Alessandro , Hernández-Cacho, Adrián , Khoury, Nadine , Babio, Nancy , Belzer, Clara , Vioque, Jesús , Corella, Dolores , Fitó, Montserrat , Clish, Clary , Vidal, Josep , Konstanti, Prokopis , Gonzales-Palacios, Sandra , Coltell, Oscar , Goday, Albert , Moreno Indias, Isabel , Carlos Chillerón, Silvia , Ruiz-Canela, Miguel , Tinahones, Francisco J. , Hu, Frank B. , Salas-Salvadó, Jordi (2025) Nutrition Journal (2025), Volume: 24 - ISSN 1475-2891

Publications of the Laboratory of Microbiology

Our publications

Evaluation of the biodegradability of surfactants through catabolism-based grouping and read-across

Paving the way : Exploring glycan-driven formation of the infant gut microbiota using synthetic communities

Buikbelang : Kennis van het darmmicrobioom zorgt voor gezondheidswinst!

Akkermansia muciniphila : biology, microbial ecology, host interactions and therapeutic potential

Class 2 Type V CRISPR-Cas prime editing

Do we need a standardized 16S rRNA gene amplicon sequencing analysis protocol for poultry microbiota research?

Assessing the potential for non-digestible carbohydrates toward mitigating adverse effects of antibiotics on microbiota composition and activity in an in vitro colon model of the weaning infant

Why do babies cry? Exploring the role of the gut microbiota in infantile colic, constipation, and cramps in the KOALA birth cohort study

Methanol and Carbon Monoxide Metabolism of the Thermophile Moorella caeni

The link between ultra-processed food consumption, fecal microbiota, and metabolomic profiles in older mediterranean adults at high cardiovascular risk

Evaluation of the biodegradability of surfactants through catabolism-based grouping and read-across

Paving the way : Exploring glycan-driven formation of the infant gut microbiota using synthetic communities

In hot pursuit : Finding novel thermophilic CO-utilising microbes for syngas fermentation

Functional characterization of novel human gut bacteria involved in the metabolism of sulfur and trimethylamine

The exploration & exploitation of CRISPR-Cas type III defence strategies