Publications of the Laboratory of Microbiology

Researchers of the Laboratory of Microbiology publish on a regular basis in scientific journals, professional journals, scientific and popular books, and proceedings.

Our publications

Evolution-assisted engineering of E. coli enables growth on formic acid at ambient CO2 via the Serine Threonine Cycle

Wenk, Sebastian , Rainaldi, Vittorio , Schann, Karin , He, Hai , Bouzon, Madeleine , Döring, Volker , Lindner, Steffen N. , Bar-Even, Arren (2025) Metabolic Engineering (2025), Volume: 88 - ISSN 1096-7176 - p. 14-24.
Influence of filter backwashing on iron, manganese, and ammonium removal in dual-media rapid sand filters used for drinking water production

Boersma, Alje S. , Haukelidsaeter, Signe , Kirwan, Liam , Corbetta, Alessia , Vos, Luuk , Lenstra, Wytze K. , Schoonenberg, Frank , Borger, Karl , van der Wielen, Paul W.J.J. , van Kessel, Maartje A.H.J. , Slomp, Caroline P. , Lücker, Sebastian (2025) Water Research (2025), Volume: 270 - ISSN 0043-1354
Facultative anaerobic bacteria enable syntrophic fatty acids degradation under micro-aerobic conditions

Magalhães, Carla Pereira , Salomé Duarte, M. , Alcina Pereira, M. , Stams, Alfons J.M. , Cavaleiro, Ana J. (2025) Bioresource Technology (2025), Volume: 417 - ISSN 0960-8524
Syngas biological transformation into hydroxyectoine

Marcos-Rodrigo, Eva , Lebrero, Raquel , Muñoz, Raúl , Sousa, Diana Z. , Cantera, Sara (2025) Bioresource Technology (2025), Volume: 417 - ISSN 0960-8524
Randomised double-blind placebo-controlled trial protocol to evaluate the therapeutic efficacy of lyophilised faecal microbiota capsules amended with next-generation beneficial bacteria in individuals with metabolic dysfunction-associated steatohepatitis

Augustijn, Quinten J.J. , Grefhorst, Aldo , De Groen, Pleun , Wortelboer, Koen , Seegers, Jos F.M.L. , Gül, Ismail Sahin , Suenaert, Peter , Verheij, Joanne , De Vos, Willem M. , Herrema, Hilde , Nieuwdorp, Max , Holleboom, Adriaan G. (2025) BMJ Open (2025), Volume: 15 - ISSN 2044-6055
International consensus statement on microbiome testing in clinical practice

Porcari, Serena , Mullish, Benjamin H. , Asnicar, Francesco , Ng, Siew C. , Zhao, Liping , Hansen, Richard , O'Toole, Paul W. , Raes, Jeroen , Hold, Georgina , Putignani, Lorenza , Hvas, Christian Lodberg , Zeller, Georg , Koren, Omry , Tun, Hein , Valles-Colomer, Mireia , Collado, Maria Carmen , Fischer, Monika , Allegretti, Jessica , Iqbal, Tariq , Chassaing, Benoit , Keller, Josbert , Baunwall, Simon Mark , Abreu, Maria , Barbara, Giovanni , Zhang, Faming , Ponziani, Francesca Romana , Costello, Sam P. , Paramsothy, Sudarshan , Kao, Dina , Kelly, Colleen , Kupcinskas, Juozas , Youngster, Ilan , Franceschi, Francesco , Khanna, Sahil , Vehreschild, Maria , Link, Alexander , De Maio, Flavio , Pasolli, Edoardo , Miguez, Aitor Blanco , Brigidi, Patrizia , Posteraro, Brunella , Scaldaferri, Franco , Stojanovic, Mirjana Rajilic , Megraud, Francis , Malfertheiner, Peter , Masucci, Luca , Arumugam, Manimozhiyan , Kaakoush, Nadeem , Segal, Eran , Bajaj, Jasmohan , Leong, Rupert , Cryan, John , Weersma, Rinse K. , Knight, Robert , Guarner, Francisco , Shanahan, Fergus , Cani, Patrice D. , Elinav, Eran , Sanguinetti, Maurizio , de Vos, Willem M. , El-Omar, Emad , Dorè, Joel , Marchesi, Julian , Tilg, Herbert , Sokol, Harry , Segata, Nicola , Cammarota, Giovanni , Gasbarrini, Antonio , Ianiro, Gianluca (2025) The Lancet Gastroenterology and Hepatology (2025), Volume: 10, Issue: 2 - ISSN 2468-1253 - p. 154-167.
Evaluation of the biodegradability of surfactants through catabolism-based grouping and read-across

Geerts, R. (2025) Wageningen University. Promotor(en): A.J.M. Stams, co-promotor(en): C.M. Plugge, Cornelis G. van Ginkel - Wageningen: Wageningen University - ISBN: 9789465103235
Exploring the Fecal Metabolome in Infants With Cow's Milk Allergy : The Distinct Impacts of Cow's Milk Protein Tolerance Acquisition and of Synbiotic Supplementation

Zhu, Pingping , Savova, Mariyana V. , Kindt, Alida , Wopereis, Harm , Belzer, Clara , Harms, Amy C. , Hankemeier, Thomas (2025) Molecular Nutrition and Food Research (2025), Volume: 69, Issue: 1 - ISSN 1613-4125
MIBiG 4.0 : advancing biosynthetic gene cluster curation through global collaboration

Zdouc, Mitja M. , Blin, Kai , Louwen, Nico L.L. , Navarro, Jorge , Loureiro, Catarina , Bader, Chantal D. , Bailey, Constance B. , Barra, Lena , Booth, Thomas J. , Bozhüyük, Kenan A.J. , Cediel-Becerra, José D.D. , Charlop-Powers, Zachary , Chevrette, Marc G. , Chooi, Yit Heng , D’Agostino, Paul M. , de Rond, Tristan , Pup, Elena Del , Duncan, Katherine R. , Gu, Wenjia , Hanif, Novriyandi , Helfrich, Eric , Jenner, Matthew , Katsuyama, Yohei , Korenskaia, Aleksandra , Krug, Daniel , Libis, Vincent , Lund, George A. , Mantri, Shrikant , Morgan, Kalindi D. , Owen, Charlotte , Phan, Chin Soon , Philmus, Benjamin , Reitz, Zachary , Robinson, Serina L. , Singh, Kumar Saurabh , Teufel, Robin , Tong, Yaojun , Tugizimana, Fidele , Ulanova, Dana , Winter, Jaclyn , Aguilar, César , Akiyama, Daniel Y. , Al-Salihi, Suhad , Alanjary, Mohammad , Alberti, Fabrizio , Aleti, Gajender , Alharthi, Shumukh A. , Arias Rojo, Mariela Y. , Arishi, Amr , Augustijn, Hannah E. , Avalon, Nicole E. , Avelar-Rivas, Abraham , Axt, Kyle K. , Barbieri, Hellen B. , Barbosa, Julio Cesar J. , Segato, Lucas Gabriel Barboza , Barrett, Susanna E. , Baunach, Martin , Beemelmanns, Christine , Beqaj, Dardan , Berger, Tim , Bernaldo-Agüero, Jordan , Bettenbühl, Sandra M. , Bielinski, Vincent A. , Biermann, Friederike , Borges, Ricardo M. , Borriss, Rainer , Breitenbach, Milena , Bretscher, Kevin M. , Brigham, Michael W. , Buedenbender, Larissa , Bulcock, Brodie W. , Cano-Prieto, Carolina , Capela, João , Carrion, Victor J. , Carter, Riley S. , Castelo-Branco, Raquel , Castro-Falcón, Gabriel , Chagas, Fernanda O. , Charria-Girón, Esteban , Chaudhri, Ayesha Ahmed , Chaudhry, Vasvi , Choi, Hyukjae , Choi, Yukyung , Choupannejad, Roya , Chromy, Jakub , Chue Donahey, Melinda S. , Collemare, Jérôme , Connolly, Jack A. , Creamer, Kaitlin E. , Crüsemann, Max , Cruz, Andres Arredondo , Cumsille, Andres , Dallery, Jean Felix , Damas-Ramos, Luis Caleb , Damiani, Tito , de Kruijff, Martinus , Martín, Belén Delgado , Sala, Gerardo Della , Dillen, Jelle , Doering, Drew T. , Dommaraju, Shravan R. , Durusu, Suhan , Egbert, Susan , Ellerhorst, Mark , Faussurier, Baptiste , Fetter, Artem , Feuermann, Marc , Fewer, David P. , Foldi, Jonathan , Frediansyah, Andri , Garza, Erin A. , Gavriilidou, Athina , Gentile, Andrea , Gerke, Jennifer , Gerstmans, Hans , Gomez-Escribano, Juan Pablo , González-Salazar, Luz A. , Grayson, Natalie E. , Greco, Claudio , Gris Gomez, Juan E. , Guerra, Sebastian , Flores, Shaday Guerrero , Gurevich, Alexey , Gutiérrez-García, Karina , Hart, Lauren , Haslinger, Kristina , He, Beibei , Hebra, Teo , Hemmann, Jethro L. , Hindra, Hindra , Höing, Lars , Holland, Darren C. , Holme, Jonathan E. , Horch, Therese , Hrab, Pavlo , Hu, Jie , Huynh, Thanh Hau , Hwang, Ji Yeon , Iacovelli, Riccardo , Iftime, Dumitrita , Iorio, Marianna , Jayachandran, Sidharth , Jeong, Eunah , Jing, Jiayi , Jung, Jung J. , Kakumu, Yuya , Kalkreuter, Edward , Kang, Kyo Bin , Kang, Sangwook , Kim, Wonyong , Kim, Geum Jin , Kim, Hyunwoo , Kim, Hyun Uk , Klapper, Martin , Koetsier, Robert A. , Kollten, Cassandra , Kovács, Ákos T. , Kriukova, Yelyzaveta , Kubach, Noel , Kunjapur, Aditya M. , Kushnareva, Aleksandra K. , Kust, Andreja , Lamber, Jessica , Larralde, Martin , Larsen, Niels J. , Launay, Adrien P. , Le, Ngoc Thao Hien , Lebeer, Sarah , Lee, Byung Tae , Lee, Kyungha , Lev, Katherine L. , Li, Shu Ming , Li, Yong Xin , Licona-Cassani, Cuauhtémoc , Lien, Annette , Liu, Jing , Lopez, Julius Adam V. , Machushynets, Nataliia V. , Macias, Marla I. , Mahmud, Taifo , Maleckis, Matiss , Martinez-Martinez, Añadir Maharai , Mast, Yvonne , Maximo, Marina F. , McBride, Christina M. , McLellan, Rose M. , Bhatt, Khyati Mehta , Melkonian, Chrats , Merrild, Aske , Metsä-Ketelä, Mikko , Mitchell, Douglas A. , Müller, Alison V. , Nguyen, Giang Son , Nguyen, Hera T. , Niedermeyer, Timo H.J. , O’Hare, Julia H. , Ossowicki, Adam , Ostash, Bohdan O. , Otani, Hiroshi , Padva, Leo , Paliyal, Sunaina , Pan, Xinya , Panghal, Mohit , Parade, Dana S. , Park, Jiyoon , Parra, Jonathan , Rubio, Marcos Pedraza , Pham, Huong T. , Pidot, Sacha J. , Piel, Jörn , Pourmohsenin, Bita , Rakhmanov, Malik , Ramesh, Sangeetha , Rasmussen, Michelle H. , Rego, Adriana , Reher, Raphael , Rice, Andrew J. , Rigolet, Augustin , Romero-Otero, Adriana , Rosas-Becerra, Luis Rodrigo , Rosiles, Pablo Y. , Rutz, Adriano , Ryu, Byeol , Sahadeo, Libby Ann , Saldanha, Murrel , Salvi, Luca , Sánchez-Carvajal, Eduardo , Santos-Medellin, Christian , Sbaraini, Nicolau , Schoellhorn, Sydney M. , Schumm, Clemens , Sehnal, Ludek , Selem, Nelly , Shah, Anjali D. , Shishido, Tania K. , Sieber, Simon , Silviani, Velina , Singh, Garima , Singh, Hemant , Sokolova, Nika , Sonnenschein, Eva C. , Sosio, Margherita , Sowa, Sven T. , Steffen, Karin , Stegmann, Evi , Streiff, Alena B. , Strüder, Alena , Surup, Frank , Svenningsen, Tiziana , Sweeney, Douglas , Szenei, Judit , Tagirdzhanov, Azat , Tan, Bin , Tarnowski, Matthew J. , Terlouw, Barbara R. , Rey, Thomas , Thome, Nicola U. , Ortega, Laura Rosina Torres , Tørring, Thomas , Trindade, Marla , Truman, Andrew W. , Tvilum, Marie , Udwary, Daniel W. , Ulbricht, Christoph , Vader, Lisa , van Wezel, Gilles P. , Walmsley, Max , Warnasinghe, Randika , Weddeling, Heiner G. , Weir, Angus N.M. , Williams, Katherine , Williams, Sam E. , Witte, Thomas E. , Wood Rocca, Steffaney M. , Yamada, Keith , Yang, Dong , Yang, Dongsoo , Yu, Jingwei , Zhou, Zhenyi , Ziemert, Nadine , Zimmer, Lukas , Zimmermann, Alina , Zimmermann, Christian , van der Hooft, Justin J.J. , Linington, Roger G. , Weber, Tilmann , Medema, Marnix H. (2025) Nucleic acids research (2025), Volume: 53, Issue: D1 - ISSN 0305-1048
Effects of environmentally relevant concentrations of citalopram in freshwater mesocosms

Versteegen, Elien , Mou, Tong , Wu, Dailing , Heikamp de Jong, Ineke , Roessink, Ivo , Peeters, Edwin T.H.M. , van den Brink, Paul J. (2025) Environmental Pollution (2025), Volume: 367 - ISSN 0269-7491

Publications of the Laboratory of Microbiology

Our publications

Evolution-assisted engineering of E. coli enables growth on formic acid at ambient CO2 via the Serine Threonine Cycle

Influence of filter backwashing on iron, manganese, and ammonium removal in dual-media rapid sand filters used for drinking water production

Facultative anaerobic bacteria enable syntrophic fatty acids degradation under micro-aerobic conditions

Syngas biological transformation into hydroxyectoine

Randomised double-blind placebo-controlled trial protocol to evaluate the therapeutic efficacy of lyophilised faecal microbiota capsules amended with next-generation beneficial bacteria in individuals with metabolic dysfunction-associated steatohepatitis

International consensus statement on microbiome testing in clinical practice

Evaluation of the biodegradability of surfactants through catabolism-based grouping and read-across

Exploring the Fecal Metabolome in Infants With Cow's Milk Allergy : The Distinct Impacts of Cow's Milk Protein Tolerance Acquisition and of Synbiotic Supplementation

MIBiG 4.0 : advancing biosynthetic gene cluster curation through global collaboration

Effects of environmentally relevant concentrations of citalopram in freshwater mesocosms

Evaluation of the biodegradability of surfactants through catabolism-based grouping and read-across

Drive safely : An exploration of Super-Mendelian inheritance by CRISPR-Cas based gene drives

The exploration & exploitation of CRISPR-Cas type III defence strategies

It takes a village : Exploring the effect of antibiotics and other modulators on raising the infant gut microbiota

Innovative genetic tools and metabolic engineering strategies for advanced biomanufacturing : A focus on Pseudomonas putida