Publications of the Laboratory of Microbiology

Researchers of the Laboratory of Microbiology publish on a regular basis in scientific journals, professional journals, scientific and popular books, and proceedings.

Our publications

Influence of filter backwashing on iron, manganese, and ammonium removal in dual-media rapid sand filters used for drinking water production

Boersma, Alje S. , Haukelidsaeter, Signe , Kirwan, Liam , Corbetta, Alessia , Vos, Luuk , Lenstra, Wytze K. , Schoonenberg, Frank , Borger, Karl , van der Wielen, Paul W.J.J. , van Kessel, Maartje A.H.J. , Slomp, Caroline P. , Lücker, Sebastian (2025) Water Research (2025), Volume: 270 - ISSN 0043-1354
Syngas biological transformation into hydroxyectoine

Marcos-Rodrigo, Eva , Lebrero, Raquel , Muñoz, Raúl , Sousa, Diana Z. , Cantera, Sara (2025) Bioresource Technology (2025), Volume: 417 - ISSN 0960-8524
Evolution-assisted engineering of E. coli enables growth on formic acid at ambient CO2 via the Serine Threonine Cycle

Wenk, Sebastian , Rainaldi, Vittorio , Schann, Karin , He, Hai , Bouzon, Madeleine , Döring, Volker , Lindner, Steffen N. , Bar-Even, Arren (2025) Metabolic Engineering (2025), Volume: 88 - ISSN 1096-7176 - p. 14-24.
Facultative anaerobic bacteria enable syntrophic fatty acids degradation under micro-aerobic conditions

Magalhães, Carla Pereira , Salomé Duarte, M. , Alcina Pereira, M. , Stams, Alfons J.M. , Cavaleiro, Ana J. (2025) Bioresource Technology (2025), Volume: 417 - ISSN 0960-8524
Randomised double-blind placebo-controlled trial protocol to evaluate the therapeutic efficacy of lyophilised faecal microbiota capsules amended with next-generation beneficial bacteria in individuals with metabolic dysfunction-associated steatohepatitis

Augustijn, Quinten J.J. , Grefhorst, Aldo , De Groen, Pleun , Wortelboer, Koen , Seegers, Jos F.M.L. , Gül, Ismail Sahin , Suenaert, Peter , Verheij, Joanne , De Vos, Willem M. , Herrema, Hilde , Nieuwdorp, Max , Holleboom, Adriaan G. (2025) BMJ Open (2025), Volume: 15 - ISSN 2044-6055
International consensus statement on microbiome testing in clinical practice

Porcari, Serena , Mullish, Benjamin H. , Asnicar, Francesco , Ng, Siew C. , Zhao, Liping , Hansen, Richard , O'Toole, Paul W. , Raes, Jeroen , Hold, Georgina , Putignani, Lorenza , Hvas, Christian Lodberg , Zeller, Georg , Koren, Omry , Tun, Hein , Valles-Colomer, Mireia , Collado, Maria Carmen , Fischer, Monika , Allegretti, Jessica , Iqbal, Tariq , Chassaing, Benoit , Keller, Josbert , Baunwall, Simon Mark , Abreu, Maria , Barbara, Giovanni , Zhang, Faming , Ponziani, Francesca Romana , Costello, Sam P. , Paramsothy, Sudarshan , Kao, Dina , Kelly, Colleen , Kupcinskas, Juozas , Youngster, Ilan , Franceschi, Francesco , Khanna, Sahil , Vehreschild, Maria , Link, Alexander , De Maio, Flavio , Pasolli, Edoardo , Miguez, Aitor Blanco , Brigidi, Patrizia , Posteraro, Brunella , Scaldaferri, Franco , Stojanovic, Mirjana Rajilic , Megraud, Francis , Malfertheiner, Peter , Masucci, Luca , Arumugam, Manimozhiyan , Kaakoush, Nadeem , Segal, Eran , Bajaj, Jasmohan , Leong, Rupert , Cryan, John , Weersma, Rinse K. , Knight, Robert , Guarner, Francisco , Shanahan, Fergus , Cani, Patrice D. , Elinav, Eran , Sanguinetti, Maurizio , de Vos, Willem M. , El-Omar, Emad , Dorè, Joel , Marchesi, Julian , Tilg, Herbert , Sokol, Harry , Segata, Nicola , Cammarota, Giovanni , Gasbarrini, Antonio , Ianiro, Gianluca (2025) The Lancet Gastroenterology and Hepatology (2025), Volume: 10, Issue: 2 - ISSN 2468-1253 - p. 154-167.
MIBiG 4.0 : advancing biosynthetic gene cluster curation through global collaboration

Zdouc, Mitja M. , Blin, Kai , Louwen, Nico L.L. , Navarro, Jorge , Loureiro, Catarina , Bader, Chantal D. , Bailey, Constance B. , Barra, Lena , Booth, Thomas J. , Bozhüyük, Kenan A.J. , Cediel-Becerra, José D.D. , Charlop-Powers, Zachary , Chevrette, Marc G. , Chooi, Yit Heng , D’Agostino, Paul M. , de Rond, Tristan , Pup, Elena Del , Duncan, Katherine R. , Gu, Wenjia , Hanif, Novriyandi , Helfrich, Eric , Jenner, Matthew , Katsuyama, Yohei , Korenskaia, Aleksandra , Krug, Daniel , Libis, Vincent , Lund, George A. , Mantri, Shrikant , Morgan, Kalindi D. , Owen, Charlotte , Phan, Chin Soon , Philmus, Benjamin , Reitz, Zachary , Robinson, Serina L. , Singh, Kumar Saurabh , Teufel, Robin , Tong, Yaojun , Tugizimana, Fidele , Ulanova, Dana , Winter, Jaclyn , Aguilar, César , Akiyama, Daniel Y. , Al-Salihi, Suhad , Alanjary, Mohammad , Alberti, Fabrizio , Aleti, Gajender , Alharthi, Shumukh A. , Arias Rojo, Mariela Y. , Arishi, Amr , Augustijn, Hannah E. , Avalon, Nicole E. , Avelar-Rivas, Abraham , Axt, Kyle K. , Barbieri, Hellen B. , Barbosa, Julio Cesar J. , Segato, Lucas Gabriel Barboza , Barrett, Susanna E. , Baunach, Martin , Beemelmanns, Christine , Beqaj, Dardan , Berger, Tim , Bernaldo-Agüero, Jordan , Bettenbühl, Sandra M. , Bielinski, Vincent A. , Biermann, Friederike , Borges, Ricardo M. , Borriss, Rainer , Breitenbach, Milena , Bretscher, Kevin M. , Brigham, Michael W. , Buedenbender, Larissa , Bulcock, Brodie W. , Cano-Prieto, Carolina , Capela, João , Carrion, Victor J. , Carter, Riley S. , Castelo-Branco, Raquel , Castro-Falcón, Gabriel , Chagas, Fernanda O. , Charria-Girón, Esteban , Chaudhri, Ayesha Ahmed , Chaudhry, Vasvi , Choi, Hyukjae , Choi, Yukyung , Choupannejad, Roya , Chromy, Jakub , Chue Donahey, Melinda S. , Collemare, Jérôme , Connolly, Jack A. , Creamer, Kaitlin E. , Crüsemann, Max , Cruz, Andres Arredondo , Cumsille, Andres , Dallery, Jean Felix , Damas-Ramos, Luis Caleb , Damiani, Tito , de Kruijff, Martinus , Martín, Belén Delgado , Sala, Gerardo Della , Dillen, Jelle , Doering, Drew T. , Dommaraju, Shravan R. , Durusu, Suhan , Egbert, Susan , Ellerhorst, Mark , Faussurier, Baptiste , Fetter, Artem , Feuermann, Marc , Fewer, David P. , Foldi, Jonathan , Frediansyah, Andri , Garza, Erin A. , Gavriilidou, Athina , Gentile, Andrea , Gerke, Jennifer , Gerstmans, Hans , Gomez-Escribano, Juan Pablo , González-Salazar, Luz A. , Grayson, Natalie E. , Greco, Claudio , Gris Gomez, Juan E. , Guerra, Sebastian , Flores, Shaday Guerrero , Gurevich, Alexey , Gutiérrez-García, Karina , Hart, Lauren , Haslinger, Kristina , He, Beibei , Hebra, Teo , Hemmann, Jethro L. , Hindra, Hindra , Höing, Lars , Holland, Darren C. , Holme, Jonathan E. , Horch, Therese , Hrab, Pavlo , Hu, Jie , Huynh, Thanh Hau , Hwang, Ji Yeon , Iacovelli, Riccardo , Iftime, Dumitrita , Iorio, Marianna , Jayachandran, Sidharth , Jeong, Eunah , Jing, Jiayi , Jung, Jung J. , Kakumu, Yuya , Kalkreuter, Edward , Kang, Kyo Bin , Kang, Sangwook , Kim, Wonyong , Kim, Geum Jin , Kim, Hyunwoo , Kim, Hyun Uk , Klapper, Martin , Koetsier, Robert A. , Kollten, Cassandra , Kovács, Ákos T. , Kriukova, Yelyzaveta , Kubach, Noel , Kunjapur, Aditya M. , Kushnareva, Aleksandra K. , Kust, Andreja , Lamber, Jessica , Larralde, Martin , Larsen, Niels J. , Launay, Adrien P. , Le, Ngoc Thao Hien , Lebeer, Sarah , Lee, Byung Tae , Lee, Kyungha , Lev, Katherine L. , Li, Shu Ming , Li, Yong Xin , Licona-Cassani, Cuauhtémoc , Lien, Annette , Liu, Jing , Lopez, Julius Adam V. , Machushynets, Nataliia V. , Macias, Marla I. , Mahmud, Taifo , Maleckis, Matiss , Martinez-Martinez, Añadir Maharai , Mast, Yvonne , Maximo, Marina F. , McBride, Christina M. , McLellan, Rose M. , Bhatt, Khyati Mehta , Melkonian, Chrats , Merrild, Aske , Metsä-Ketelä, Mikko , Mitchell, Douglas A. , Müller, Alison V. , Nguyen, Giang Son , Nguyen, Hera T. , Niedermeyer, Timo H.J. , O’Hare, Julia H. , Ossowicki, Adam , Ostash, Bohdan O. , Otani, Hiroshi , Padva, Leo , Paliyal, Sunaina , Pan, Xinya , Panghal, Mohit , Parade, Dana S. , Park, Jiyoon , Parra, Jonathan , Rubio, Marcos Pedraza , Pham, Huong T. , Pidot, Sacha J. , Piel, Jörn , Pourmohsenin, Bita , Rakhmanov, Malik , Ramesh, Sangeetha , Rasmussen, Michelle H. , Rego, Adriana , Reher, Raphael , Rice, Andrew J. , Rigolet, Augustin , Romero-Otero, Adriana , Rosas-Becerra, Luis Rodrigo , Rosiles, Pablo Y. , Rutz, Adriano , Ryu, Byeol , Sahadeo, Libby Ann , Saldanha, Murrel , Salvi, Luca , Sánchez-Carvajal, Eduardo , Santos-Medellin, Christian , Sbaraini, Nicolau , Schoellhorn, Sydney M. , Schumm, Clemens , Sehnal, Ludek , Selem, Nelly , Shah, Anjali D. , Shishido, Tania K. , Sieber, Simon , Silviani, Velina , Singh, Garima , Singh, Hemant , Sokolova, Nika , Sonnenschein, Eva C. , Sosio, Margherita , Sowa, Sven T. , Steffen, Karin , Stegmann, Evi , Streiff, Alena B. , Strüder, Alena , Surup, Frank , Svenningsen, Tiziana , Sweeney, Douglas , Szenei, Judit , Tagirdzhanov, Azat , Tan, Bin , Tarnowski, Matthew J. , Terlouw, Barbara R. , Rey, Thomas , Thome, Nicola U. , Ortega, Laura Rosina Torres , Tørring, Thomas , Trindade, Marla , Truman, Andrew W. , Tvilum, Marie , Udwary, Daniel W. , Ulbricht, Christoph , Vader, Lisa , van Wezel, Gilles P. , Walmsley, Max , Warnasinghe, Randika , Weddeling, Heiner G. , Weir, Angus N.M. , Williams, Katherine , Williams, Sam E. , Witte, Thomas E. , Wood Rocca, Steffaney M. , Yamada, Keith , Yang, Dong , Yang, Dongsoo , Yu, Jingwei , Zhou, Zhenyi , Ziemert, Nadine , Zimmer, Lukas , Zimmermann, Alina , Zimmermann, Christian , van der Hooft, Justin J.J. , Linington, Roger G. , Weber, Tilmann , Medema, Marnix H. (2025) Nucleic acids research (2025), Volume: 53, Issue: D1 - ISSN 0305-1048
Quantification of high molecular weight organic carbon concentrations with LC-OCD and PHMOC for biological stability investigation of drinking water produced from surface water

Schurer, R. , Brouwer-Hanzens, A. , van der Wielen, P.W.J.J. , van Lieverloo, J.H.M. , Hijnen, W.A.M. (2025) Water Research (2025), Volume: 271 - ISSN 0043-1354
Exploring the Fecal Metabolome in Infants With Cow's Milk Allergy : The Distinct Impacts of Cow's Milk Protein Tolerance Acquisition and of Synbiotic Supplementation

Zhu, Pingping , Savova, Mariyana V. , Kindt, Alida , Wopereis, Harm , Belzer, Clara , Harms, Amy C. , Hankemeier, Thomas (2025) Molecular Nutrition and Food Research (2025), Volume: 69, Issue: 1 - ISSN 1613-4125
Effects of environmentally relevant concentrations of citalopram in freshwater mesocosms

Versteegen, Elien , Mou, Tong , Wu, Dailing , Heikamp de Jong, Ineke , Roessink, Ivo , Peeters, Edwin T.H.M. , van den Brink, Paul J. (2025) Environmental Pollution (2025), Volume: 367 - ISSN 0269-7491

Publications of the Laboratory of Microbiology

Our publications

Influence of filter backwashing on iron, manganese, and ammonium removal in dual-media rapid sand filters used for drinking water production

Syngas biological transformation into hydroxyectoine

Evolution-assisted engineering of E. coli enables growth on formic acid at ambient CO2 via the Serine Threonine Cycle

Facultative anaerobic bacteria enable syntrophic fatty acids degradation under micro-aerobic conditions

Randomised double-blind placebo-controlled trial protocol to evaluate the therapeutic efficacy of lyophilised faecal microbiota capsules amended with next-generation beneficial bacteria in individuals with metabolic dysfunction-associated steatohepatitis

International consensus statement on microbiome testing in clinical practice

MIBiG 4.0 : advancing biosynthetic gene cluster curation through global collaboration

Quantification of high molecular weight organic carbon concentrations with LC-OCD and PHMOC for biological stability investigation of drinking water produced from surface water

Exploring the Fecal Metabolome in Infants With Cow's Milk Allergy : The Distinct Impacts of Cow's Milk Protein Tolerance Acquisition and of Synbiotic Supplementation

Effects of environmentally relevant concentrations of citalopram in freshwater mesocosms

Evaluation of the biodegradability of surfactants through catabolism-based grouping and read-across

pH down, adaptability up : the versatile physiology of Acidophilic sulfate-reducing bacteria

Functional characterization of novel human gut bacteria involved in the metabolism of sulfur and trimethylamine

To rebehold the cell : Natural and synthetic cell cycles through the lenses of macromolecular motion

The exploration & exploitation of CRISPR-Cas type III defence strategies