Publications of the Bioinformatics Group

Latest Peer Reviewed Publications

• Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH

  Li, Yuze , Sun, Mingxue , Raaijmakers, Jos M. , Mommer, Liesje , Zhang, Fusuo , Song, Chunxu , Medema, Marnix H. (2025) Nature Communications (2025), Volume: 16 - ISSN 2041-1723

• Gene co-occurrence and its association with phage infectivity in bacterial pangenomes

  Kupczok, Anne , Gavriilidou, Athina , Paulitz, Emilian , Guerrero-García, Lucía , Baumdicker, Franz (2025) Philosophical Transactions of the Royal Society B: Biological Sciences (2025), Volume: 380, Issue: 1934 - ISSN 0962-8436

• Polygenic prediction of body mass index and obesity through the life course and across ancestries

  Smit, Roelof A.J. , Wade, Kaitlin H. , Hui, Qin , Arias, Joshua D. , Yin, Xianyong , Christiansen, Malene R. , Yengo, Loic , Preuss, Michael H. , Nakabuye, Mariam , Rocheleau, Ghislain , Graham, Sarah E. , Buchanan, Victoria L. , Chittoor, Geetha , Graff, Marielisa , Guindo-Martínez, Marta , Lu, Yingchang , Marouli, Eirini , Sakaue, Saori , Spracklen, Cassandra N. , Vedantam, Sailaja , Wilson, Emma P. , Chen, Shyh-Huei , Ferreira, Teresa , Ji, Yingjie , Karaderi, Tugce , Lüll, Kreete , Machado, Moara , Malden, Deborah E. , Medina-Gomez, Carolina , Moore, Amy , Rüeger, Sina , Akiyama, Masato , Allison, Matthew A. , Alvarez, Marcus , Andersen, Mette K. , Appadurai, Vivek , Arbeeva, Liubov , Bartell, Eric , Bhaskar, Seema , Bielak, Lawrence F. , Bis, Joshua C. , Bollepalli, Sailalitha , Bork-Jensen, Jette , Bradfield, Jonathan P. , Bradford, Yuki , Brandl, Caroline , Braund, Peter S. , Brody, Jennifer A. , Broeckel, Ulrich , Burgdorf, Kristoffer S. , Cade, Brian E. , Cai, Qiuyin , Camarda, Silvia , Campbell, Archie , Cañadas-Garre, Marisa , Chai, Jin-Fang , Chesi, Alessandra , Choi, Seung Hoan , Christofidou, Paraskevi , Couture, Christian , Cuellar-Partida, Gabriel , Danning, Rebecca , Degenhardt, Frauke , Delgado, Graciela E. , Delitala, Alessandro , Demirkan, Ayşe , Deng, Xuan , Dietl, Alexander , Dimitriou, Maria , Dimitrov, Latchezar , Dorajoo, Rajkumar , Eichelmann, Fabian , Eliasen, Anders U. , Engmann, Jorgen E. , Erdos, Michael R. , Fairhurst-Hunter, Zammy , Farmaki, Aliki-Eleni , Faul, Jessica D. , Fernandez-Lopez, Juan-Carlos , Forer, Lukas , Frank, Mirjam , Freitag-Wolf, Sandra , Fritsche, Lars G. , Fuchsberger, Christian , Galesloot, Tessel E. , Gao, Yan , Geller, Frank , Giannakopoulou, Olga , Giulianini, Franco , Gjesing, Anette P. , Goel, Anuj , Gordon, Scott D. , Gorski, Mathias , Grove, Jakob , Guo, Xiuqing , Gustafsson, Stefan , Haessler, Jeffrey , Hansen, Thomas F. , Havulinna, Aki S. , Haworth, Simon J. , Heard-Costa, Nancy , Hemerich, Daiane , Highland, Heather M. , Hindy, George , Ho, Yuk-Lam , Hofer, Edith , Holliday, Elizabeth , Horn, Katrin , Hornsby, Whitney E. , Hottenga, Jouke-Jan , Huang, Hongyan , Huang, Jie , Huerta-Chagoya, Alicia , Huo, Shaofeng , Hwang, Mi Yeong , Hwu, Chii-Min , Iha, Hiroyuki , Ikeda, Daisuke D. , Isono, Masato , Jackson, Anne U. , Jansen, Iris E. , Jiang, Yunxuan , Johansson, Ingegerd , Jonsson, Anna , Jørgensen, Torben , Kalafati, Ioanna P. , Kanai, Masahiro , Kanoni, Stavroula , Kårhus, Line L. , Kasturiratne, Anuradhani , Katsuya, Tomohiro , Kawaguchi, Takahisa , Kember, Rachel L. , Kentistou, Katherine A. , Kim, Daeeun , Kim, Han-Na , Kim, Young Jin , Kleber, Marcus E. , Knol, Maria J. , Kurbasic, Azra , Lauzon, Marie , Le, Phuong , Lea, Rodney , Lee, Jong-Young , Lee, Wen-Jane , Leonard, Hampton L. , Li, Hengtong , Li, Shengchao A. , Li, Xiaohui , Li, Xiaoyin , Liang, Jingjing , Lin, Honghuang , Lin, Kuang , Liu, Jun , Liu, Xueping , Lo, Ken Sin , Long, Jirong , Lores-Motta, Laura , Luan, J. , Lyssenko, Valeriya , Lyytikäinen, Leo-Pekka , Mahajan, Anubha , Malik, Md Zubbair , Mamakou, Vasiliki , Mangino, Massimo , Manichaikul, Ani , Marten, Jonathan , Mattheisen, Manuel , McDaid, Aaron F. , Mei, Quanshun , Meiselbach, Heike , Melendez, Tori L. , Milaneschi, Yuri , Miller, Jason E. , Millwood, Iona Y. , Mishra, Pashupati P. , Mitchell, Ruth E. , Møllehave, Line T. , Mononen, Nina , Mucha, Sören , Munz, Matthias , Mykkänen, Juha , Nakatochi, Masahiro , Nardone, Giuseppe Giovanni , Nelson, Christopher P. , Nethander, Maria , Nho, Chu Won , Nielsen, Aneta A. , Nolte, Ilja M. , Nongmaithem, Suraj S. , Noordam, Raymond , Ntalla, Ioanna , Nutile, Teresa , Pandit, Anita , Pauper, Marc , Petersen, Eva R.B. , Petersen, Liselotte V. , Piluso, Francesco , Polašek, Ozren , Poveda, Alaitz , Pyarajan, Saiju , Raffield, Laura M. , Rakugi, Hiromi , Ramirez, Julia , Rasheed, Asif , Raven, Dennis , Rayner, Nigel W. , Riveros, Carlos , Rohde, Rebecca , Ruggiero, Daniela , Ruotsalainen, Sanni E. , Ryan, Kathleen A. , Sabater-Lleal, Maria , Santin, Aurora , Saxena, Richa , Scholz, Markus , Shen, Botong , Shi, Jingchunzi , Shin, Jae Hun , Sidore, Carlo , Sidorenko, Julia , Sim, Xueling , Slieker, Roderick C. , Smith, Albert V. , Smith, Jennifer A. , Smyth, Laura J. , Southam, Lorraine , Steinthorsdottir, Valgerdur , Sun, Liang , Takeuchi, Fumihiko , Taylor, Kent D. , Tayo, Bamidele O. , Tcheandjieu, Catherine , Terzikhan, Natalie , Tesolin, Paola , Teumer, Alexander , Theusch, Elizabeth , Thompson, Deborah J. , Thorleifsson, Gudmar , Timmers, Paul R.H.J. , Trompet, Stella , Turman, Constance , Vaccargiu, Simona , van der Laan, Sander W. , van der Most, Peter J. , van Klinken, Jan B. , van Setten, Jessica , Verma, Shefali S. , Verweij, Niek , Veturi, Yogasudha , Wang, Carol A. , Wang, Chaolong , Wang, Jun-Sing , Wang, Lihua , Wang, Ya Xing , Wang, Zhe , Warren, Helen R. , Bin Wei, Wen , Wen, Wanqing , Wheeler, William A. , Wickremasinghe, Ananda R. , Wielscher, Matthias , Winsvold, Bendik S. , Wong, Andrew , Wuttke, Matthias , Xia, Rui , Yamamoto, Ken , Yang, Jingyun , Yao, Jie , Young, Hannah , Yousri, Noha A. , Yu, Lei , Zeng, Lingyao , Zhang, Weihua , Zhang, Xinyuan , Zhao, Jing-Hua , Zhao, Wei , Zhou, Wei , Zimmermann, Martina E. , Zoledziewska, Magdalena , ‘t Hart, Leen M. , Adair, Linda S. , Adams, Hieab H.H. , Aguilar-Salinas, Carlos A. , Al-Mulla, Fahd , Arnett, Donna K. , Asselbergs, Folkert W. , Åsvold, Bjørn Olav , Attia, John , Banas, Bernhard , Bandinelli, Stefania , Beilin, Lawrence J. , Bennett, David A. , Bergler, Tobias , Bharadwaj, Dwaipayan , Biino, Ginevra , Boerwinkle, Eric , Böger, Carsten A. , Borja, Judith B. , Bouchard, Claude , Bowden, Donald W. , Brandslund, Ivan , Brumpton, Ben , Buring, Julie E. , Caulfield, Mark J. , Chambers, John C. , Chandak, Giriraj R. , Chanock, Stephen J. , Chaturvedi, Nish , Ida Chen, Yii-Der , Chen, Zhengming , Cheng, Ching-Yu , Cho, Yoon Shin , Christensen, Kaare , Christophersen, Ingrid E. , Ciullo, Marina , Cole, John W. , Collins, Francis S. , Concas, Maria Pina , Cooper, Richard S. , Cruz, Miguel , Cucca, Francesco , Cutler, Michael J. , Damrauer, Scott M. , Dantoft, Thomas M. , de Borst, Gert J. , de Geus, Eco J.C. , de Groot, Lisette C.P.G.M. , De Jager, Philip L. , de Kleijn, Dominique P.V. , de Silva, H.J. , Dedoussis, George V. , den Hollander, Anneke I. , Du, Shufa , Easton, Douglas F. , Eckardt, Kai-Uwe , Elders, Petra J.M. , Eliassen, A.H. , Ellinor, Patrick T. , Elmståhl, Sölve , Erdmann, Jeanette , Evans, Michele K. , Fatkin, Diane , Feenstra, Bjarke , Feitosa, Mary F. , Ferrucci, Luigi , Florez, Jose C. , Ford, Ian , Fornage, Myriam , Franke, Andre , Franks, Paul W. , Freedman, Barry I. , Gieger, Christian , Girotto, Giorgia , Golightly, Yvonne M. , Gonzalez-Villalpando, Clicerio , Gordon-Larsen, Penny , Grallert, Harald , Grant, Struan F.A. , Grarup, Niels , Griffiths, Lyn , Gudnason, Vilmundur , Haiman, Christopher , Hakonarson, Hakon , Hansen, Torben , Hartman, Catharina A. , Hattersley, Andrew T. , Hayward, Caroline , Heid, Iris M. , Heng, Chew-Kiat , Hengstenberg, Christian , Herzig, Karl-Heinz , Hewitt, Alex W. , Hishigaki, Haretsugu , Hougaard, David M. , Hoyng, Carel B. , Huang, Paul L. , Huang, Wei , Huang, Wen-Yi , Huffman, Jennifer E. , Hunt, Steven C. , Hutri, Nina , Hveem, Kristian , Hyppönen, Elina , Iacono, William G. , Ichihara, Sahoko , Ikram, M.A. , Isasi, Carmen R. , Jarvelin, Marjo-Riitta , Jin, Zi-Bing , Jöckel, Karl-Heinz , Jonas, Jost B. , Joshi, Peter K. , Jousilahti, Pekka , Jukema, J.W. , Kähönen, Mika , Kamatani, Yoichiro , Kang, Kui Dong , Kaprio, Jaakko , Kardia, Sharon L.R. , Karpe, Fredrik , Kato, Norihiro , Kavousi, Maryam , Kee, Frank , Kessler, Thorsten , Khera, Amit V. , Khor, Chiea Chuen , Kiemeney, Lambertus A.L.M. , Kim, Bong-Jo , Kim, Eung Kweon , Kim, Hyung-Lae , Kirchhof, Paulus , Kivimaki, Mika , Koh, Woon-Puay , Koistinen, Heikki A. , Kokkinos, Alexander , Kooner, Jaspal S. , Kooperberg, Charles , Kovacs, Peter , Kraaijeveld, Adriaan , Kraft, Peter , Krauss, Ronald M. , Kumari, Meena , Kutalik, Zoltan , Laakso, Markku , Lange, Leslie A. , Langenberg, Claudia , Launer, Lenore J. , Lee, Hyejin , Lee, Nanette R. , Lehtimäki, Terho , Lemaitre, Rozenn N. , Li, Huaixing , Li, Liming , Lieb, Wolfgang , Lin, Xu , Lind, Lars , Linneberg, Allan , Liu, Ching-Ti , Liu, Jianjun , Loeffler, Markus , London, Barry , Lu, Fan , Lubitz, Steven A. , Mackey, David A. , Magnusson, Patrik K.E. , Manson, Joann E. , Marcus, Gregory M. , Marques Vidal, Pedro , Martin, Nicholas G. , März, Winfried , Matsuda, Fumihiko , McCarthy, Mark I. , McGarrah, Robert W. , McGue, Matt , McKnight, Amy Jayne , Medland, Sarah E. , Mellström, Dan , Metspalu, Andres , Mitchell, Braxton D. , Mitchell, Paul , Mook-Kanamori, Dennis O. , Mori, Trevor A. , Morris, Andrew D. , Mucci, Lorelei A. , Munroe, Patricia B. , Nalls, Mike A. , Nazarian, Saman , Nelson, Amanda E. , Neville, Matt J. , Newton-Cheh, Christopher , Nielsen, Christopher S. , Niinikoski, Harri , Nikus, Kjell , Nöthen, Markus M. , Ogunniyi, Adesola , Ohlsson, Claes , Oldehinkel, Albertine J. , Orozco, Lorena , Pahkala, Katja , Pajukanta, Päivi , Palmer, Colin N.A. , Parra, Esteban J. , Pattaro, Cristian , Pedersen, Oluf , Pennell, Craig E. , Penninx, Brenda W.J.H. , Perusse, Louis , Peters, Annette , Peyser, Patricia A. , Porteous, David J. , Posthuma, Danielle , Power, Chris , Pramstaller, Peter P. , Province, Michael A. , Psaty, Bruce M. , Qi, Qibin , Qu, Jia , Rader, Daniel J. , Raitakari, Olli T. , Rallidis, Loukianos S. , Rao, Dabeeru C. , Redline, Susan , Reilly, Dermot F. , Reiner, Alexander P. , Rhee, Sang Youl , Ridker, Paul M. , Rienstra, Michiel , Ripatti, Samuli , Ritchie, Marylyn D. , Rivadeneira, Fernando , Roden, Dan M. , Rosendaal, Frits R. , Rotter, Jerome I. , Rudan, Igor , Rutters, Femke , Ryu, Seungho , Sabanayagam, Charumathi , Salako, Babatunde , Saleheen, Danish , Salomaa, Veikko , Samani, Nilesh J. , Sanghera, Dharambir K. , Sattar, Naveed , Schmidt, Börge , Schmidt, Helena , Schmidt, Reinhold , Schulze, Matthias B. , Schunkert, Heribert , Scott, Laura J. , Scott, Rodney J. , Sever, Peter , Sheu, Wayne H.H. , Shoemaker, M.B. , Shu, Xiao-Ou , Simonsick, Eleanor M. , Sims, Mario , Singleton, Andrew B. , Sinner, Moritz F. , Smith, J.G. , Snieder, Harold , Spector, Tim D. , Spedicati, Beatrice , Stampfer, Meir J. , Stark, Klaus J. , Strachan, David P. , Tabara, Yasuharu , Shyong Tai, E. , Tang, Hua , Tardif, Jean-Claude , Thanaraj, Thangavel A. , Tönjes, Anke , Tuomi, Tiinamaija , Tuomilehto, Jaakko , Tusié-Luna, Maria-Teresa , van Dam, Rob M. , van der Harst, Pim , Van der Velde, Nathalie , van Duijn, Cornelia M. , van Schoor, Natasja M. , Vitart, Veronique , Vohl, Marie-Claude , Völker, Uwe , Vollenweider, Peter , Völzke, Henry , Vrieze, Scott , Wacher-Rodarte, Niels H. , Walker, Mark , Wander, Gurpreet S. , Wareham, Nicholas J. , Watanabe, Richard M. , Watkins, Hugh , Weir, David R. , Werge, Thomas M. , Widen, Elisabeth , Willemsen, Gonneke , Willett, Walter C. , Wilson, James F. , Wilson, Peter W.F. , Wong, Tien Y. , Woo, Jeong-Taek , Wright, Alan F. , Xu, Huichun , Yajnik, Chittaranjan S. , Yang, Jian , Yokota, Mitsuhiro , Yuan, Jian-Min , Zeggini, Eleftheria , Zemel, Babette S. , Zheng, Wei , Zhu, Xiaofeng , Zillikens, M.C. , Zonderman, Alan B. , Zwart, John-Anker , Abecasis, Goncalo R. , Assimes, Themistocles L. , Auton, Adam , Boehnke, Michael , Chasman, Daniel I. , Esko, Tõnu , Stefansson, Kari , Lettre, Guillaume , Lindgren, Cecilia M. , Ng, Maggie C.Y. , O’Donnell, Christopher J. , Thorsteinsdottir, Unnur , Visscher, Peter M. , Walters, Robin G. , Winkler, Thomas W. , Wood, Andrew R. , Deloukas, Panos , Frayling, Timothy M. , Justice, Anne E. , Kilpeläinen, Tuomas O. , Locke, Adam E. , Mohlke, Karen L. , North, Kari E. , Okada, Yukinori , Willer, Cristen J. , Young, Kristin L. , Fatumo, Segun , McCaffery, Jeanne M. , Timpson, Nicholas J. , Hirschhorn, Joel N. , Sun, Yan V. , Berndt, Sonja I. , Loos, Ruth J.F. (2025) Nature Medicine (2025), Volume: 31, Issue: 9 - ISSN 1078-8956 - p. 3151-3168.

• The case of sugar beet in Europe : a review of the challenges for a traditional food crop on the verge of climate change and circular agriculture

  Nap, Jan Peter , de Ruijter, Frank J. , van Es, Daan S. , van der Meer, Ingrid M. (2025) Journal of Agriculture and Food Research (2025), Volume: 24 - ISSN 2666-1543

• Antibiotics Sources, Concentrations, and Risk of Antimicrobial Resistance Selection in the Three Gorges Reservoir Basin, China

  Li, Shiyang , Zhang, Qi , Chen, Meijun , Strokal, Maryna , Kroeze, Carolien , Ma, Lin , Zhang, Fusuo , Chen, Xuanjing , Chen, Xinping , Hofstra, Nynke (2025) Environmental Science and Technology (2025), Volume: 59, Issue: 36 - ISSN 0013-936X - p. 19398-19413.

• Brassica diversity through the lens of polyploidy: genomic evolution, introgression and homoeologous exchange

  Wang, T. , van Dijk, A.D.J. , Cai, Xu , Wu, Jian , Bonnema, A.B. , Wang, Xiaowu (2025) Horticultural Plant Journal (2025), Volume: 11, Issue: 5 - ISSN 2095-9885

• Wheat crop models underestimate drought stress in semi-arid and Mediterranean environments

  Webber, H. , Cooke, D. , Wang, C. , Asseng, S. , Martre, P. , Ewert, F. , Kimball, B. , Hoogenboom, G. , Evett, S. , Chanzy, A. , Garrigues, S. , Olioso, A. , Copeland, K.S. , Steiner, J.L. , Cammarano, D. , Chen, Y. , Crépeau, M. , Diamantopoulos, E. , Ferrise, R. , Manceau, L. , Gaiser, T. , Gao, Y. , Gayler, S. , Guarin, J.R. , Hunt, T. , Jégo, G. , Padovan, G. , Pattey, E. , Ripoche, D. , Rodríguez, A. , Ruiz-Ramos, M. , Shelia, V. , Srivastava, A.K. , Supit, I. , Tao, F. , Thorp, K. , Viswanathan, M. , Weber, T. , White, J. (2025) Field Crops Research (2025), Volume: 332 - ISSN 0378-4290

• Genome mining based on transcriptional regulatory networks uncovers a novel locus involved in desferrioxamine biosynthesis

  Augustijn, Hannah E. , Reitz, Zachary L. , Zhang, Le , Boot, Jeanine A. , Elsayed, Somayah S. , Challis, Gregory L. , Medema, Marnix H. , van Wezel, Gilles P. (2025) PloS Biology (2025), Volume: 23 - ISSN 1544-9173

• Multipla : Multiscale Pangenomic Locus Analysis

  van den Brandt, A. , Ståhlbom, E. , van Workum, F.J.M. , van de Wetering, H. , Lundström, C. , Smit, S. , Vilanova, A. (2025) Computer Graphics Forum (2025), Volume: 44, Issue: 3 - ISSN 0167-7055

• Independent Avian Epigenetic Clocks for Ageing and Development

  Haller, Ayke , Risse, Judith , Sepers, Bernice , van Oers, Kees (2025) Molecular Ecology Resources (2025), Volume: 25, Issue: 7 - ISSN 1755-098X