Publications of the Bioinformatics Group

Latest Peer Reviewed Publications

• The effect of developmental variation on expression QTLs in a multi parental C. elegans population

  van Eijnatten, A.L. , Sterken, M.G. , Kammenga, J.E. , Nijveen, H. , Snoek, B.L. (2023) G3 : Genes Genomes Genetics (2023) - ISSN 2160-1836

• Epizootic Hemorrhagic Disease (EHD) – Systematic Literature Review report

  de Souza Santos, Mariana Avelino , Gonzales Rojas, José , Swanenburg, Manon , Vidal, Gema , Evans, Dan , Horigan, Verity , Betts, Jonathan , La Ragione, Roberto , Horton, Daniel , Dórea, Fernanda (2023) EFSA Supporting Publications (2023), Volume: 20, Issue: 11 - ISSN 2397-8325

• Animal Movements and FMDV Transmission during the High-Risk Period of the 2001 FMD Epidemic in Uruguay

  Iriarte-Vera, María , Gonzáles, José , Gil, Andrés , de Jong, Mart (2023) Transboundary and Emerging Diseases (2023), Volume: 2023 - ISSN 1865-1674

• Protein interaction mapping reveals widespread targeting of development-related host transcription factors by phytoplasma effectors

  Correa Marrero, M. , Capdevielle, Sylvain , Huang, Weijie , Al-subhi, Ali M. , Busscher, M. , Busscher-Lange, J. , van der Wal, F. , de Ridder, D. , van Dijk, A.D.J. , Hogenhout, Saskia A. , Immink, G.H. (2023) The Plant Journal (2023) - ISSN 0960-7412

• Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding

  Xiong, Wei , van Workum, Dirk-Jan , Berke, Lidija , Bakker, Linda , Schijlen, Elio , Becker, Frank , van de Geest, Henri , Peters, Sander , Michelmore, Richard , van Treuren, Rob , Jeuken, Marieke , Smit, Sandra , Schranz, Eric (2023) G3: Genes, Genomes, Genetics (2023), Volume: 13, Issue: 11 - ISSN 2160-1836

• The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more

  Blin, Kai , Shaw, Simon , Medema, Marnix , Weber, Tilmann (2023) Nucleic acids research (2023) - ISSN 0305-1048

• Editorial: Predicting virus evolution: from genome evolution to epidemiological trends

  Zwart, Mark , Kupczok, Anne , Iranzo, Jaime (2023) Frontiers in Virology (2023), Volume: 3 - ISSN 2673-818X

• An observational study of the presence and variability of the microbiota composition of goat herd milk related to mainstream and artisanal farm management

  Hoving-Bolink, Rita A.H. , Antonis, Adriaan F.G. , te Pas, Marinus F.W. , Schokker, Dirkjan (2023) PLoS ONE (2023), Volume: 18 - ISSN 1932-6203

• Dietary supplementation of zinc oxide modulates intestinal functionality during the post-weaning period in clinically healthy piglets

  Schokker, Dirkjan , Kar, Soumya K. , Willems, Els , Bossers, Alex , Dekker, Ruud A. , Jansman, Alfons J.M. (2023) Journal of Animal Science and Biotechnology (2023), Volume: 14, Issue: 1 - ISSN 1674-9782

• Challenges for the development of automated RNA-seq analyses pipelines

  Beukers, Matthieu , Allmer, Jens (2023) Deutsche Gesellschaft fur Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS) (2023), Volume: 19 - ISSN 1860-9171