Peer-reviewed publications of the Virtual Plant Network Wageningen
2020
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Light from below matters: Quantifying the consequences of responses to far‐red light reflected upwards for plant performance in heterogeneous canopies
Plant, Cell & Environment 44 (2021)1. - ISSN 0140-7791 - p. 102 - 113. -
Simulating the effects of water limitation on plant biomass using a 3D functional-structural plant model of shoot and root driven by soil hydraulics
Annals of Botany 126 (2020)4. - ISSN 0305-7364 - p. 713 - 728.
2019
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Disentangling the effects of photosynthetically active radiation and red to far-red ratio on plant photosynthesis under canopy shading. A simulation study using a functional-structural plant model
Annals of Botany (2019). - ISSN 0305-7364 -
Ecological significance of light quality in optimizing plant defence
Plant, Cell & Environment 42 (2019)3. - ISSN 0140-7791 - p. 1065 - 1077. -
Ecological interactions shape the adaptive value of plant defence : Herbivore attack versus competition for light
Functional Ecology 33 (2019)1. - ISSN 0269-8463 - p. 129 - 138. -
Quantifying the contribution of bent shoots to plant photosynthesis and biomass production of flower shoots in rose (Rosa hybrida) using a functional–structural plant model
Annals of Botany 126 (2020)4. - ISSN 0305-7364 - p. 587 - 599. -
Understanding and optimizing species mixtures using functional–structural plant modelling
Journal of Experimental Botany 70 (2019)9. - ISSN 0022-0957 - p. 2381 - 2388. -
Variation in plastic responses to light results from selection in different competitive environments-A game theoretical approach using virtual plants
PLoS Computational Biology 15 (2019)8. - ISSN 1553-734X - p. e1007253 - e1007253.
2018
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Computational botany: Advancing plant science through functional-structural plant modelling
Annals of Botany 121 (2018)5. - ISSN 0305-7364 - p. 767 - 772. -
Elucidating the interaction between light competition and herbivore feeding patterns using functional-structural plant modelling
Annals of Botany 121 (2018)5. - ISSN 0305-7364 - p. 1019 - 1031. -
Quantifying within-plant spatial heterogeneity in carbohydrate availability in cotton using a local-pool model
Annals of Botany 121 (2018)5. - ISSN 0305-7364 - p. 1005 - 1017. -
Subtle variation in shade avoidance responses may have profound consequences for plant competitiveness
Annals of Botany 121 (2018)5. - ISSN 0305-7364 - p. 863 - 873. -
Understanding and optimizing species mixtures using functional–structural plant modelling
Journal of Experimental Botany 70 (2019)9. - ISSN 0022-0957 - p. 2381 - 2388.
2017
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Neighbor detection at the leaf tip adaptively regulates upward leaf movement through spatial auxin dynamics
Proceedings of the National Academy of Sciences of the United States of America 114 (2017)28. - ISSN 0027-8424 - p. 7450 - 7455. -
Dynamic Plant-Plant-Herbivore Interactions Govern Plant Growth-Defence Integration
Trends in Plant Science 22 (2017)4. - ISSN 1360-1385 - p. 329 - 337.
2016
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Identification of plant configurations maximizing radiation capture in relay strip cotton using a functional-structural plant model
Field Crops Research 187 (2016). - ISSN 0378-4290 - p. 1 - 11. -
Quantifying the effect of crop spatial arrangement on weed suppression using functional-structural plant modelling
Journal of Plant Research (2016). - ISSN 0918-9440 - p. 339 - 351. -
Virtual microstructural leaf tissue generation based on cell growth modeling
Acta Horticulturae 1110 (2016). - ISSN 0567-7572 - p. 155 - 162. -
Mesophyll conductance and reaction-diffusion models for CO2 transport in C3 leaves; needs, opportunities and challenges
Plant Science 252 (2016). - ISSN 0168-9452 - p. 62 - 75. -
Three-dimensional microscale modelling of CO2 transport and light propagation in tomato leaves enlightens photosynthesis
Plant, Cell & Environment 39 (2016)1. - ISSN 0140-7791 - p. 50 - 61. -
A two-dimensional microscale model of gas exchange during photosynthesis in maize (Zea mays L.) leaves
Plant Science 246 (2016). - ISSN 0168-9452 - p. 37 - 51. -
Impact of anatomical traits of maize (Zea mays L.) leaf as affected by nitrogen supply and leaf age on bundle sheath conductance
Plant Science 252 (2016). - ISSN 0168-9452 - p. 205 - 214. -
Bridging the genotype-phenotype gap in 3D
Journal of Experimental Botany 67 (2016)15. - ISSN 0022-0957 - p. 4427 - 4430. -
Temperature response of bundle-sheath conductance in maize leaves
Journal of Experimental Botany 67 (2016)9. - ISSN 0022-0957 - p. 2699 - 2714.
2015
2014
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From shade avoidance responses to plant performance at vegetation level: using virtual plant modelling as a tool
New Phytologist 204 (2014)2. - ISSN 0028-646X - p. 268 - 272. -
Modelling the structural response of cotton plants to mepiquat chloride and population density
Annals of Botany 114 (2014)4. - ISSN 0305-7364 - p. 877 - 887. -
What is the most prominent factor limiting photosynthesis in different layers of a greenhouse cucumber canopy?
Annals of Botany 114 (2014)4. - ISSN 0305-7364 - p. 677 - 688. -
Canopy architectural and physiological characterization of near-isogenic wheat lines differing in the tiller inhibition gene tin
Frontiers in Plant Science 5 (2014). - ISSN 1664-462X - 14 p. -
Predicting the effects of environment and management on cotton fibre growth and quality: a functional–structural plant modelling approach
AoB Plants 6 (2014). - ISSN 2041-2851 - 16 p. -
Towards modelling the flexible timing of shoot development: simulation of maize organogenesis based on coordination within and between phytomers
Annals of Botany 114 (2014)4. - ISSN 0305-7364 - p. 753 - 762. -
Early competition shapes maize whole-plant development in mixed stands
Journal of Experimental Botany 65 (2014)2. - ISSN 0022-0957 - p. 641 - 653. -
Plant density affects light interception and yield in cotton grown as companion crop in young jujube plantations
Field Crops Research 169 (2014). - ISSN 0378-4290 - p. 132 - 139. -
Maize yield and quality in response to plant density and application of a novel plant growth regulator
Field Crops Research 164 (2014). - ISSN 0378-4290 - p. 82 - 89. -
Axillary budbreak in a cut rose crop as influenced by light intensity and red:far-red ratio at bud level
Journal of the American Society for Horticultural Science 139 (2014)2. - ISSN 0003-1062 - p. 131 - 138.
2013
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Extension of the GroIMP modelling platform to allow easy specification of differential equations describing biological processes within plant models
Computers and Electronics in Agriculture 92 (2013). - ISSN 0168-1699 - p. 1 - 8. -
Modeling branching in cereals
Frontiers in Plant Science 4 (2013). - ISSN 1664-462X - 6 p.
2012
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A microscale model for combined CO2 diffusion and photosynthesis in leaves
PLoS ONE 7 (2012)11. - ISSN 1932-6203 - 15 p. -
A virtual plant that responds to the environment like a real one: the case for chrysanthemum
New Phytologist 195 (2012)2. - ISSN 0028-646X - p. 384 - 395. -
Plant neighbor detection through touching leaf tips precedes phytochrome signals
Proceedings of the National Academy of Sciences of the United States of America 109 (2012)36. - ISSN 0027-8424 - p. 14705 - 14710.
2011
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Temporal dynamics of light and nitrogen vertical distributions in canopies of sunflower, kenaf and cynara
Field Crops Research 122 (2011)3. - ISSN 0378-4290 - p. 186 - 198. -
Towards a functional–structural plant model of cut-rose: simulation of light environment, light absorption, photosynthesis and interference with the plant structure
Annals of Botany 108 (2011)6. - ISSN 0305-7364 - p. 1121 - 1134. -
Using functional–structural plant models to study, understand and integrate plant development and ecophysiology
Annals of Botany 108 (2011)6. - ISSN 0305-7364 - p. 987 - 989. -
Understanding shoot branching by modelling form and function
Trends in Plant Science 16 (2011)9. - ISSN 1360-1385 - p. 464 - 467. -
How plant architecture affects light absorption and photosynthesis in tomato: towards an ideotype for plant architecture using a functional-structural plant model
Annals of Botany 108 (2011)6. - ISSN 0305-7364 - p. 1065 - 1073. -
Exploring the spatial distribution of light interception and photosynthesis of canopies by means of a functional-structural plant model
Annals of Botany 107 (2011)5. - ISSN 0305-7364 - p. 875 - 883. -
Modelling functional trait acclimation for trees of different height in a forest light gradient: emergent patterns driven by carbon gain maximization
Tree Physiology 31 (2011)9. - ISSN 0829-318X - p. 1024 - 1037. -
A functional-structural model of rice linking quantitative genetic information with morphological development and physiological processes
Annals of Botany 107 (2011)5. - ISSN 0305-7364 - p. 817 - 828.
2010
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Simulation of wheat growth and development based on organ-level photosynthesis and assimilate allocation
Journal of Experimental Botany 61 (2010)8. - ISSN 0022-0957 - p. 2203 - 2216. -
Functional-structural plant modelling: a new versatile tool in crop science
Journal of Experimental Botany 61 (2010)8. - ISSN 0022-0957 - p. 2101 - 2115. -
Modelling the crop: from system dynamics to systems biology
Journal of Experimental Botany 61 (2010)8. - ISSN 0022-0957 - p. 2171 - 2183.
2009
2008
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A rule-based model of barley morphogenesis, with special respect to shading and gibberellic acid signal transduction
Annals of Botany 101 (2008). - ISSN 0305-7364 - p. 1109 - 1123. -
The rule-based language XL and the modelling environment GroIMP illustrated with simulated tree competition
Functional Plant Biology 35 (2008)9-10. - ISSN 1445-4408 - p. 739 - 750. -
The derivation of sink functions of wheat organs using the GREENLAB model
Annals of Botany 101 (2008). - ISSN 0305-7364 - p. 1099 - 1108.
2007
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Simulation of the three-dimensional distribution of the red:far-red ratio within crop canopies
New Phytologist 176 (2007)1. - ISSN 0028-646X - p. 223 - 234. -
Simulating the effects of localized red:far-red ratio on tillering in spring wheat (Triticum aestivum) using a three-dimensional virtual plant model
New Phytologist 176 (2007)2. - ISSN 0028-646X - p. 325 - 336. -
An architectural model of spring wheat : Evaluation of the effects of population density and shading on model parameterization and performance
Ecological Modelling 200 (2007)3-4. - ISSN 0304-3800 - p. 308 - 320. -
3-D growth patterns of tress: effects of carbon economy, meristem activity, and selection
Ecological Monographs 77 (2007)3. - ISSN 0012-9615 - p. 405 - 420.
2006
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A functional-Structural Model of Chrysanthemum for Prediction of Ornamental Quality
Acta Horticulturae 718 (2006). - ISSN 0567-7572 - p. 59 - 66. -
Building Virtual Chrysanthemum Based on Sink-Source Relationships: Preliminary Results
Acta Horticulturae 2006 (2006)718. - ISSN 0567-7572 - p. 129 - 136.
2005
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Towards a generic architectural model of tillering in Gramineae, as exemplified by spring wheat (Triticum aestivum L.)
New Phytologist 166 (2005)3. - ISSN 0028-646X - p. 801 - 812. -
Performance of trees in forest canopies: explorations with a bottom-up functional-structural plant growth model
New Phytologist 166 (2005)3. - ISSN 0028-646X - p. 827 - 843. -
Woody tree architecture
In: Plant Architecture and its Manipulation / , Turnbull, C.G.N., Campus, W.. - Oxford : John Wiley & Sons, Ltd (Animal Plant Reviews ) - ISBN 9781405121286 - p. 208 - 237.
Buck-Sorlin GH, Kniemeyer O, Kurth W. 2005. "Barley morphology, genetics and hormonal regulation of internode elongation modelled by a relational growth grammar." New Phytologist 166: 859-867.
2004
Kniemeyer O, Buck-Sorlin GH, Kurth W. 2004. "A graph grammar approach to artificial life." Artificial Life 10: 413-431.