The greenhouse whitefly Trialeurodes vaporariorum is a major threat in tomato cultivation. In greenhouse grown tomatoes non-trichome based whitefly resistance may be better suited than glandular trichome based resistance as glandular trichomes may interfere with biocontrol, which is widely used. Analysis of a collection of recombinant inbred lines derived from a cross between Solanum lycopersicum and Solanum galapagense showed resistance to the whitefly T. vaporariorum on plants without glandular trichomes type IV. The resistance affected whitefly adult survival (AS), but not oviposition rate. This indicates that S. galapagense, in addition to trichome based resistance, also carries non-trichome based resistance components. The effectiveness of the non-trichome based resistance appeared to depend on the season in which the plants were grown. The resistance also had a small but significant effect on the whitefly Bemisia tabaci, but not on the thrips Frankliniella occidentalis. A segregating F2 population was created to map the non-trichome based resistance. Two Quantitative trait loci (QTLs) for reduced AS of T. vaporariorum were mapped on chromosomes 12 and 7 (explaining 13.9% and 6.0% of the variance respectively). The QTL on chromosome 12 was validated in F3 lines.