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Evolutionary metagenomics

Information on the Evolutionary Metagenomics group: https://annecmg.github.io/

Publications

Dataset underlying the publication: "MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment"

van Workum, Dirk-Jan M. , Dey, Kunta Kumar , Kozik, Alexander , Lavelle, Dean , de Ridder, Dick , Schranz, Eric , Michelmore, Richard , Smit, Sandra (2025)
Bridging polarities in metabolomics: Cross-ionization mode chemical similarity prediction between tandem mass spectra

de Jonge, Niek F. , Chekmeneva, Elena , Schmid, Robin , Joas, David , Truong, Lem-Joe , van der Hooft, Justin J.J. , Huber, Florian (2025)
antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation

Blin, Kai , Shaw, Simon , Vader, Lisa , Szenei, Judit , Reitz, Zachary L. , Augustijn, Hannah E. , Cediel-Becerra, Jose D.D. , de Crecy-Lagard, Valerie , Koetsier, Robert A. , Williams, Sam E. , Cruz-Morales, Pablo , Wongwas, Sopida , Segurado Luchsinger, Alejandro , Biermann, Friederike , Korenskaia, Aleksandra , Zdouc, Mitja M. , Meijer, David , Terlouw, Barbara R. , van der Hooft, Justin J.J. , Ziemert, Nadine , Helfrich, Eric J.N. , Masschelein, Joleen , Corre, Christophe , Chevrette, Marc G. , van Wezel, Gilles P. , Medema, Marnix H. , Weber, Tilmann (2025) Nucleic acids research (2025) - ISSN 0305-1048
mite_schema

Zdouc, M.M. , Rutz, Adriano (2025)
Biosynfoni: A Biosynthesis-informed and Interpretable Lightweight Molecular Fingerprint

Nollen, Lucina-May , Meijer, David , Sorokina, Maria , van der Hooft, Justin (2025)