Integration of -omics data
...under construction...
Research Projects
...under construction...
Publications
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poreTally: run and publish de novo nanopore assembler benchmarks
Bioinformatics (2018). - ISSN 1367-4803 - 2 p.
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Improved inference of intermolecular contacts through protein–protein interaction prediction using coevolutionary analysis
Bioinformatics (2018). - ISSN 1367-4803 - 7 p.
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In silico predictions of variant deleteriousness in the genomes of pig species
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Genome-wide characterization of Phytophthora infestans metabolism : a systems biology approach
Molecular Plant Pathology 19 (2018)6. - ISSN 1464-6722 - p. 1403 - 1413.
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Single-molecule protein sequencing through fingerprinting: computational assessment
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Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study
Briefings in Bioinformatics 19 (2018)3. - ISSN 1467-5463 - p. 387 - 403.
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Computational pan-genomics: status, promises and challenges
Briefings in Bioinformatics 19 (2018)1. - ISSN 1467-5463 - p. 118 - 135.
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Whole-genome amplification (WGA) create specific chimeric fragments, which consist mainly of palindrome sequences. We developed the tool Pacasus to detect and correct these palindromic sequences in long reads, for example from PacBio and Nanopore
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Correcting palindromes in long reads after whole-genome amplification
bioRxiv (2017). - 22 p.
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Genomics of adaptation depends on the rate of environmental change in experimental yeast populations
Molecular Biology and Evolution 34 (2017)10. - ISSN 0737-4038 - p. 2613 - 2626.