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Plant Sciences
Bioinformatics
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Genomics of specialized metabolism

Genomics of specialized metabolism

Publications

Exploring the Interspecific Interactions and the Metabolome of the Soil Isolate Hylemonella gracilis

Tyc, Olaf , Kulkarni, Purva , Ossowicki, Adam , Tracanna, V. , Medema, M.H. , van Baarlen, P. , van IJcken, W.F.J. , Verhoeven, Koen J.F. , Garbeva, Paolina (2023) mSystems (2023), Volume: 8, Issue: 1 - ISSN 2379-5077
iPRESTO: integrated Prediction and Rigorous Exploration of biosynthetic Sub-clusters Tool

Louwen, J.J.R. , Kautsar, S.A. , van der Burg, S. , Medema, M.H. , van der Hooft, J.J.J. (2022) Wageningen: Wageningen University & Research
TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome

McDaniel, E.A. , van Steenbrugge, J.J.M. , Noguera, D.R. , McMahon, K.D. , Raaijmakers, J.M. , Medema, M.H. , Oyserman, B. (2022) ISME Communications (2022), Volume: 2 - ISSN 2730-6151
NPLinker

Geng, Cunliang , Crocioni, Giulia , Rogers, Simon , Ramsay, Andrew , Duncan, Katherine , van der Hooft, J.J.J. , Hjörleifsson, Grímur , Soldatou, Sylvia , Huber, Florian , Wandy, Joe , Daly, Ronan , Louwen, J.J.R. , Medema, M.H. (2021)
Activated Sludge Bioreactor MAGs

McDaniel, E.A. , van Steenbrugge, J.J.M. , Noguera, D.R. , McMahon, K.D. , Raaijmakers, J.M. , Medema, M.H. , Oyserman, B. (2021)
A biaryl-linked tripeptide from Planomonospora reveals a widespread class of minimal RiPP gene clusters

Zdouc, Mitja M. , Alanjary, M.M. , Zarazúa, Guadelupe S. , Maffioli, Sonia I. , Crüsemann, M. , Medema, M.H. , Donadio, Stefano , Sosio, Margherita (2021) Cell Chemical Biology (2021), Volume: 28, Issue: 5 - ISSN 2451-9456 - p. 733-739.e4.
Microbial natural product databases: moving forward in the multi-omics era

Van Santen, Jeffrey A. , Kautsar, S.A. , Medema, M.H. , Linington, Roger G. (2021) Natural Product Reports (2021), Volume: 38, Issue: 1 - ISSN 0265-0568 - p. 264-278.
Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae

Liu, Zhenhua , Suarez Duran, Hernando , Harnvanichvech, Yosapol , Stephenson, Michael J. , Schranz, M.E. , Nelson, David , Medema, M.H. , Osbourn, Anne (2020) New Phytologist (2020), Volume: 227, Issue: 4 - ISSN 0028-646X - p. 1109-1123.
MIBiG 2.0: a repository for biosynthetic gene clusters of known functions

Kautsar, S.A. , Blin, Kai , Shaw, Simon , Navarro Munoz, J.C. , Terlouw, Barbara , van der Hooft, J.J.J. , Van Santen, Jeffrey A. , Tracanna, V. , Suarez Duran, Hernando , Pascal Andreu, V. , Selem Mojica, Nelly , Alanjary, Mohammad , Robinson, Serina , Lund, George , Epstein, Samuel C. , Sisto, Ashley C. , Charkoudian, Louise K. , Collemare, Jérôme , Linington, Roger G. , Weber, Tilmann , Medema, M.H. (2020) Nucleic acids research (2020), Volume: 48, Issue: D1 - ISSN 0305-1048 - p. D454-D458.
PanTools

Nijveen, H. , Smit, S. , Medema, M.H. , de Ridder, D. , van Dijk, A.D.J. , Jonkheer, E.M. , van der Hooft, J.J.J. , van Lankveld, T. , Moed, M. , van Workum, F.J.M. (2019) Wageningen: Wageningen University & Research

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