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Genomics of specialized metabolism

Publications

Exploring the Interspecific Interactions and the Metabolome of the Soil Isolate Hylemonella gracilis

Tyc, Olaf , Kulkarni, Purva , Ossowicki, Adam , Tracanna, V. , Medema, M.H. , Baarlen, P. van , IJcken, W.F.J. van , Verhoeven, Koen J.F. , Garbeva, Paolina (2023) mSystems 8 (2023)1. - ISSN 2379-5077 - 21 p.
iPRESTO: integrated Prediction and Rigorous Exploration of biosynthetic Sub-clusters Tool

Louwen, J.J.R. , Kautsar, S.A. , Burg, S. van der , Medema, M.H. , Hooft, J.J.J. van der (2022) Wageningen : Wageningen University & Research
TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome

McDaniel, E.A. , Steenbrugge, J.J.M. van , Noguera, D.R. , McMahon, K.D. , Raaijmakers, J.M. , Medema, M.H. , Oyserman, B. (2022) ISME Communications 2 (2022). - ISSN 2730-6151
NPLinker

Geng, Cunliang , Crocioni, Giulia , Rogers, Simon , Ramsay, Andrew , Duncan, Katherine , Hooft, J.J.J. van der , Hjörleifsson, Grímur , Soldatou, Sylvia , Huber, Florian , Wandy, Joe , Daly, Ronan , Louwen, J.J.R. , Medema, M.H. (2021) : Zenodo
Microbial natural product databases: moving forward in the multi-omics era

Santen, Jeffrey A. Van , Kautsar, S.A. , Medema, M.H. , Linington, Roger G. (2021) Natural Product Reports 38 (2021)1. - ISSN 0265-0568 - p. 264 - 278.
A biaryl-linked tripeptide from Planomonospora reveals a widespread class of minimal RiPP gene clusters

Zdouc, Mitja M. , Alanjary, M.M. , Zarazúa, Guadelupe S. , Maffioli, Sonia I. , Crüsemann, M. , Medema, M.H. , Donadio, Stefano , Sosio, Margherita (2021) Cell Chemical Biology 28 (2021)5. - ISSN 2451-9456 - p. 733 - 739.e4.
MIBiG 2.0: a repository for biosynthetic gene clusters of known functions

Kautsar, S.A. , Blin, Kai , Shaw, Simon , Navarro Munoz, J.C. , Terlouw, Barbara , Hooft, J.J.J. van der , Santen, Jeffrey A. Van , Tracanna, V. , Suarez Duran, Hernando , Pascal Andreu, V. , Selem Mojica, Nelly , Alanjary, Mohammad , Robinson, Serina , Lund, George , Epstein, Samuel C. , Sisto, Ashley C. , Charkoudian, Louise K. , Collemare, Jérôme , Linington, Roger G. , Weber, Tilmann , Medema, M.H. (2020) Nucleic acids research 48 (2020)D1. - ISSN 0305-1048 - p. D454 - D458.
Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae

Liu, Zhenhua , Suarez Duran, Hernando , Harnvanichvech, Yosapol , Stephenson, Michael J. , Schranz, M.E. , Nelson, David , Medema, M.H. , Osbourn, Anne (2020) New Phytologist 227 (2020)4. - ISSN 0028-646X - p. 1109 - 1123.
PanTools

Nijveen, H. , Smit, S. , Medema, M.H. , Ridder, D. de , Dijk, A.D.J. van , Jonkheer, E.M. , Hooft, J.J.J. van der , Lankveld, T. van , Moed, M. , Workum, F.J.M. van (2019) Wageningen : Wageningen University & Research
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters

Blin, Kai , Kim, Hyun Uk , Medema, M.H. , Weber, Tilmann (2019) Briefings in Bioinformatics 20 (2019)4. - ISSN 1467-5463 - p. 1103 - 1113.

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