Wageningen Omics Facility - Metabolomics and Proteomics

Good to know
In short- Advanced mass spectrometry for metabolite analysis.
- Broad profiling through untargeted metabolomics.
- Custom solutions and data integration with bioinformatics.
The Wageningen Omics Facility helps companies uncover the chemical and protein foundations of their products. Using advanced metabolomics and proteomics analyses, we link molecules and proteins to the properties that matter – from taste and nutritional value to shelf life, functionality and safety.
What can you achieve at Wageningen Omics Facility?
The Wageningen Omics Facility offers in-depth analyses of metabolites and proteins in plants, seeds, food products and other biological materials. Using cutting-edge mass spectrometry and chromatographic techniques, we can identify thousands of compounds, proteins and peptides simultaneously, and relate them to genetic, environmental or processing factors.
Businesses and research organisations use our data to:
- develop new varieties with improved flavour, aroma or resistance;
- understand quality changes during storage or processing;
- discover bioactive compounds with nutritional or pharmaceutical potential;
- detect allergens in plants and food products, and study how processing affects allergen presence;
- identify metabolic and protein markers for breeding or quality monitoring.
Our integrated approach combines wet-lab expertise and data science to generate practical insights that drive innovation in agriculture, plant breeding, food and biotechnology.
“Metabolomics and proteomics give us the key to the hidden chemistry and proteins behind quality — from flavour to resilience.”
- Dr Roland Mumm
- Wageningen University & Research
Who is Wageningen Omics Facility for?
Wageningen Omics Facility is designed for companies and researchers working in plant breeding, seed quality, food production, natural ingredients or crop protection. Suppliers, biotech firms and research institutes also rely on us for accurate analyses and trusted collaboration in applied metabolomics and proteomics.
Why choose this facility?

We offer:
- Advanced analytical platforms (HPLC, GC-MS, LC-MS including QTOF and Orbitrap)
- Full bioinformatics and biostatistics support
- Over 150 peer-reviewed publications and international projects
- Extensive experience in commercial and academic partnerships
- Experts who translate analytical results into biological and economic relevance
Questions about this facility?
Do you have a question or would you like to work together? Contact our expert.
dr. R (Roland) Mumm
Wageningen Omics Facility