Software Plant Breeding
The experts of Plant Breeding developed several software tools. The majority of these products are free-to-use for academic parties.
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BreeDB
Research within Plant breeding are dealing with a lot of data, obtained from field-trials but also from high-throughput analysis of molecular markers,... -
Breeding Game
"Breeder" is an entertaining plant breeding game, that puts you in the position of the breeder that has to make selection with a limited... -
fitPoly
fitPoly is an R package fro genotype calling of polyploid individuals based on bi-allelic marker assays such as Axiom, Infinium and KASP arrays. The... -
FlexQTL for QTL analysis in pedigreed populations
FlexQTL is a software package for Quantitative Trait Loci (QTL) analysis with an emphasis on the known pedigree of a population. Such a population may... -
Marker2sequence
Marker2sequence (M2S) aims at mining quantitative trait loci (QTLs) for candidate genes. -
MQ²
MQ² extracts all the QTLs detected by MapQTL, R/qtl or any other QTL mapping tool, it finds the marker closest to the peak and finally calculates... -
omicsFusion
OmicsFusion is a web application which can perform univariate regression and a number of modern regression techniques and then ranks the predictors...
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PedigreeSim
PedigreeSim is software that generates simulated genetic marker data of individuals in diploid and polyploid pedigreed populations. -
PediHaplotyper
Pedihaplotyper is a tool to assign ‘haploblock alleles’ to individuals in a pedigree. A haploblock is a set of closely linked genetic... -
Pedimap
Pedimap is a tool for exploring and visualizing the flow of phenotypes and alleles (observed or based on Identity-by-Descent calculations) through... -
Prediction of REgulatory CIS-acting Elements
Assume we have a set of sequences upstream of genes that are involved in a pathway with a common function. Since these genes are to be regulated more... -
RECORD
The program RECORD (REcombination Counting and ORDering) can be used for the ordering of loci on genetic linkage maps. The method minimises the total... -
SMOOTH
The program SMOOTH can be used for the cleaning of data and removal of genotyping errors that appear after mapping and comparing the scores with...