The group focuses on research aimed at understanding the interaction between genotype, environment and management by using all kinds of different techniques and databases. Therefore database development, maintenance and use is an important area of attention. Furthermore statistical aspects of using large datasets especially in the field of transcriptomics and metabolomics is a major focus area.
Crops: potato, brassica, tomato and other crops of importance.
- Construction of linkage maps and QTL analysis
- Linkage Disequillibrium mapping and association mapping
- Epistatis mapping
- Genetical genomics
- Genomic prediction and selection
- Estimation of Genotype x Environment interaction
- Relating henotype data to microarray, metabolomics or proteomics data
- Methods and software for genetic analysis in polyploid species
Broad spectrum insect resistance and metabolites in close relatives of the cultivated tomato
Euphytica 214 (2018)3. - ISSN 0014-2336
Genetical genomics of quality related traits in potato tubers using proteomics.
BMC Plant Biology 18 (2018). - ISSN 1471-2229
An ultra-dense integrated linkage map for hexaploid chrysanthemum enables multi-allelic QTL analysis
Theoretical and Applied Genetics 130 (2017)12. - ISSN 0040-5752 - p. 2527 - 2541.
Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array
BMC Genomics 18 (2017)1. - ISSN 1471-2164
Molecular Breeding 37 (2017)8. - ISSN 1380-3743
Genome-wide association analysis for lodging tolerance and plant height in a diverse European hexaploid oat collection
Euphytica 213 (2017)8. - ISSN 0014-2336
Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes
Molecular Breeding 37 (2017)7. - ISSN 1380-3743 - 10 p.
Partial preferential chromosome pairing is genotype dependent in tetraploid rose
The Plant Journal 90 (2017)2. - ISSN 0960-7412 - p. 330 - 343.
High-Density SNP Maps in Rose to Understand the Meiotic Behavior and Determine the Synteny with Fragaria
Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study
Briefings in Bioinformatics (2017). - ISSN 1467-5463 - 17 p.
- Aina Kokare
- Peter Bourke