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Publications of the Bioinformatics Group

View the complete publication list of the Bioinformatics Group in the Research@WUR database.

Latest Peer Reviewed Publications

Ecology and genomics of Actinobacteria : new concepts for natural product discovery

Bergeijk, Doris A. van , Terlouw, Barbara R. , Medema, Marnix H. , Wezel, Gilles P. van (2020) Nature Reviews Microbiology (2020). - ISSN 1740-1526
Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings

Geshnizjani, Nafiseh , Snoek, Basten L. , Willems, Leo A.J. , Rienstra, Juriaan A. , Nijveen, Harm , Hilhorst, Henk W.M. , Ligterink, Wilco (2020) Plant, Cell & Environment (2020). - ISSN 0140-7791
Minimum error correction-based haplotype assembly : Considerations for long read data

Majidian, Sina , Kahaei, Mohammad Hossein , Ridder, Dick de (2020) PLoS ONE 15 (2020)6. - ISSN 1932-6203 - p. e0234470 - e0234470.
Linking genomics and metabolomics to chart specialized metabolic diversity

Hooft, Justin J.J. van der , Mohimani, Hosein , Bauermeister, Anelize , Dorrestein, Pieter C. , Duncan, Katherine R. , Medema, Marnix H. (2020) Chemical Society Reviews 49 (2020)11. - ISSN 0306-0012 - p. 3297 - 3314.
The planctomycete Stieleria maiorica Mal15<sup>T</sup> employs stieleriacines to alter the species composition in marine biofilms

Kallscheuer, Nicolai , Jeske, Olga , Sandargo, Birthe , Boedeker, Christian , Wiegand, Sandra , Bartling, Pascal , Jogler, Mareike , Rohde, Manfred , Petersen, Jörn , Medema, Marnix H. , Surup, Frank , Jogler, Christian (2020) Communications Biology 3 (2020)1. - ISSN 2399-3642
Computational genomic discovery of diverse gene clusters harbouring Fe-S flavoenzymes in anaerobic gut microbiota

Andreu, Victòria Pascal , Fischbach, Michael A. , Medema, Marnix H. (2020) Microbial Genomics 6 (2020)5. - ISSN 2057-5858 - p. 1 - 8.
Impact of Gut Bacteria on the Infection and Transmission of Pathogenic Arboviruses by Biting Midges and Mosquitoes

Möhlmann, Tim W.R. , Vogels, Chantal B.F. , Göertz, Giel P. , Pijlman, Gorben P. , Braak, Cajo J.F. ter , Beest, Dennis E. te , Hendriks, Marc , Nijhuis, Els H. , Warris, Sven , Drolet, Barbara S. , Overbeek, Leo van , Koenraadt, Constantianus J.M. (2020) Microbial Ecology (2020). - ISSN 0095-3628
Novel routes towards bioplastics from plants: elucidation of the methylperillate biosynthesis pathway from Salvia dorisiana trichomes

Jongedijk, Esmer , Müller, Sebastian , Dijk, Aalt D.J. Van , Schijlen, Elio , Champagne, Antoine , Boutry, Marc , Levisson, Mark , Krol, Sander Van Der , Bouwmeester, Harro , Beekwilder, Jules , Takahashi, Hideki (2020) Journal of Experimental Botany 71 (2020)10. - ISSN 0022-0957 - p. 3052 - 3065.
Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Aron, Allegra T. , Gentry, Emily C. , McPhail, Kerry L. , Nothias, Louis Félix , Nothias-Esposito, Mélissa , Bouslimani, Amina , Petras, Daniel , Gauglitz, Julia M. , Sikora, Nicole , Vargas, Fernando , Hooft, Justin J.J. van der , Ernst, Madeleine , Kang, Kyo Bin , Aceves, Christine M. , Caraballo-Rodríguez, Andrés Mauricio , Koester, Irina , Weldon, Kelly C. , Bertrand, Samuel , Roullier, Catherine , Sun, Kunyang , Tehan, Richard M. , Boya P, Cristopher A. , Christian, Martin H. , Gutiérrez, Marcelino , Ulloa, Aldo Moreno , Tejeda Mora, Javier Andres , Mojica-Flores, Randy , Lakey-Beitia, Johant , Vásquez-Chaves, Victor , Zhang, Yilue , Calderón, Angela I. , Tayler, Nicole , Keyzers, Robert A. , Tugizimana, Fidele , Ndlovu, Nombuso , Aksenov, Alexander A. , Jarmusch, Alan K. , Schmid, Robin , Truman, Andrew W. , Bandeira, Nuno , Wang, Mingxun , Dorrestein, Pieter C. (2020) Nature protocols 15 (2020). - ISSN 1754-2189 - p. 1954 - 1991.
Caretta – A multiple protein structure alignment and feature extraction suite

Akdel, Mehmet , Durairaj, Janani , Ridder, Dick de , Dijk, Aalt D.J. van (2020) Computational and Structural Biotechnology Journal 18 (2020). - ISSN 2001-0370 - p. 981 - 992.